Publications

The various lists of citations below are generated by a Python script I wrote. The script takes the source of this page as input, and then replaces any instances of papercite() commands with the relevant filtered list of publications from the bibtex file exported from my main Zotero database.

These statements are called papercite() because I had to implement an inferior (or maybe not, it’s off-line!) off-line replacement for the brilliant papercite wordpress plugin.

• You can download the complete bibtex file here.
• You can now also try my papercite_static script for yourself.
• You can also just browse my Google Scholar profile although the list here has more directly linked PDFs.

Book

• Bernhard Preim and Charl Botha. Visual Computing for Medicine. Morgan Kaufmann, 2 edition, 2013. ISBN 978-0-12-415873-3. 00000. URL: http://medvisbook.com/.

This is the standard text for the field of Medical Visualization. Read more about the book by going to medvisbook.com.

Theses

• Charl Pieter Botha. Techniques and Software Architectures for Medical Visualisation and Image Processing. PhD thesis, Delft University of Technology, 2005. 00009.
• Charl Pieter Botha. An On-Line Machine Vision Flotation Froth Analysis Platform. PhD thesis, University of Stellenbosch, 1999. 00002 M.Sc. thesis.

Don’t be fooled by Zotero’s exporter: I wrote one Ph.D. thesis on medical visualization and one M.Sc. thesis on froth. Yes froth.

Journal Articles

2016

• Gijsbert J. Hötte, Peter J. Schaafsma, Charl P. Botha, Piotr A. Wielopolski, and Huibert J. Simonsz. Visualization of Sliding and Deformation of Orbital Fat During Eye Rotation. Translational Vision Science & Technology, 5(4):9, July 2016. URL: http://tvst.arvojournals.org/article.aspx?doi=10.1167/tvst.5.4.9, doi:10.1167/tvst.5.4.9.

2015

• Daniel F. Malan, Stéfan J. van der Walt, Renata G. Raidou, Bas van den Berg, Berend C. Stoel, Charl P. Botha, Rob G. H. H. Nelissen, and Edward R. Valstar. A fluoroscopy-based planning and guidance software tool for minimally invasive hip refixation by cement injection. International Journal of Computer Assisted Radiology and Surgery, 11(2):281–296, August 2015. URL: http://link.springer.com/article/10.1007/s11548-015-1252-8, doi:10.1007/s11548-015-1252-8.

2014

• Oleh Dzyubachyk, Artem Khmelinskii, Esben Plenge, Peter Kok, Thomas J. A. Snoeks, Dirk H. J. Poot, Clemens W. G. M. Löwik, Charl P. Botha, Wiro J. Niessen, Louise van der Weerd, Erik Meijering, and Boudewijn P. F. Lelieveldt. Interactive Local Super-Resolution Reconstruction of Whole-Body MRI Mouse Data: A Pilot Study with Applications to Bone and Kidney Metastases. PLOS ONE, 9(9):e108730, September 2014. URL: http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0108730, doi:10.1371/journal.pone.0108730.

2013

• Oleh Dzyubachyk, Jorik Blaas, Charl P. Botha, Marius Staring, Monique Reijnierse, Johan L. Bloem, Rob J. van der Geest, and Boudewijn P.F. Lelieveldt. Comparative Exploration of Whole-Body MR through Locally Rigid Transforms. International Journal of Computer Assisted Radiology and Surgery, 2013. 00000.
• Daniel F. Malan, Charl P. Botha, and Edward R. Valstar. Voxel classification and graph cuts for automated segmentation of pathological periprosthetic hip anatomy. International Journal of Computer Assisted Radiology and Surgery, 8:63–74, 2013. 00001. URL: http://www.springerlink.com/content/e434940v78n20385/, doi:10.1007/s11548-012-0671-z.
• A.C. Kraima, N.N. Smit, D. Jansma, C. Wallner, R.L.A.W. Bleys, C.J.H. van de Velde, C.P. Botha, and M.C. DeRuiter. Toward a highly-detailed 3d pelvic model: Approaching an ultra-specific level for surgical simulation and anatomical education. Clinical Anatomy, 26(3):333–338, 2013. 00000. URL: http://onlinelibrary.wiley.com/doi/10.1002/ca.22207/abstract, doi:10.1002/ca.22207.

2012

• Charl P. Botha, Bernhard Preim, Arie Kaufman, Shigeo Takahashi, and Anders Ynnerman. From individual to population: Challenges in Medical Visualization. arXiv:1206.1148, June 2012. 00001. URL: http://charlbotha.com/publications/botha_individual_2012/.
• Corine Godeschalk-Slagboom, Rob van der Geest, Katja Zeppenfeld, and Charl Botha. Cardiac MRI visualization for ventricular tachycardia ablation. International Journal of Computer Assisted Radiology and Surgery, pages 1–15, 2012. 00000. URL: http://www.springerlink.com/content/n766351h83w05128/abstract/, doi:10.1007/s11548-012-0776-4.
• Daniel F. Malan, Charl P. Botha, Gert Kraaij, Raoul M. S. Joemai, Huub J. L. Heide, Rob G. H. H. Nelissen, and Edward R. Valstar. Measuring femoral lesions despite CT metal artefacts: a cadaveric study. Skeletal Radiology, 41(5):547–555, 2012. 00003. URL: http://www.springerlink.com/content/b324511urm460415/, doi:10.1007/s00256-011-1223-2.
• Thomas Kroes, Frits H. Post, and Charl P. Botha. Exposure Render: An Interactive Photo-Realistic Volume Rendering Framework. PLoS ONE, 7(7):e38586, July 2012. 00012. URL: http://dx.doi.org/10.1371/journal.pone.0038586, doi:10.1371/journal.pone.0038586.
• Hanspeter Pfister, Verena Kaynig, Charl P. Botha, Stefan Bruckner, Vincent J. Dercksen, Hans-Christian Hege, and Jos B. T. M. Roerdink. Visualization in Connectomics. arXiv:1206.1428, June 2012. 00001. URL: http://arxiv.org/abs/1206.1428.

2011

• Stef Busking, Charl P. Botha, Luca Ferrarini, Julien Milles, and Frits H. Post. Image-based rendering of intersecting surfaces for dynamic comparative visualization. The Visual Computer, 27:347–363, 2011. 00005. URL: http://dl.acm.org/citation.cfm?id=1967417, doi:10.1007/s00371-010-0541-z.
• F. V Paulovich, D. M Eler, J. Poco, C. P Botha, R. Minghim, and L. G Nonato. Piecewise Laplacian‐based Projection for Interactive Data Exploration and Organization. Computer Graphics Forum, 30(3):1091–1100, June 2011. 00000. URL: http://onlinelibrary.wiley.com/doi/10.1111/j.1467-8659.2011.01958.x/abstract, doi:10.1111/j.1467-8659.2011.01958.x.
• Bernhard Preim and Charl P. Botha. Special Section on Visual Computing in Biology and Medicine (Guest Editorship). Computers & Graphics, 35(2):218–430, 2011. 00000.
• Kenji Sihan, Charl Botha, Frits Post, Sebastiaan de Winter, Nieves Gonzalo, Evelyn Regar, Patrick W Serruys, Ronald Hamers, and Nico Bruining. Retrospective image-based gating of intracoronary optical coherence tomography: implications for quantitative analysis. EuroIntervention: Journal of EuroPCR in Collaboration with the Working Group on Interventional Cardiology of the European Society of Cardiology, 6(9):1098–1103, April 2011. 00003 PMID: 21518683. URL: http://www.ncbi.nlm.nih.gov/pubmed/21518683, doi:10.4244/EIJV6I9A191.
• Xi Zhang, Jorik Blaas, Charl Botha, Peter Reischig, Alberto Bravin, and Joris Dik. Process for the 3d virtual reconstruction of a microcultural heritage artifact obtained by synchrotron radiation CT technology using open source and free software. Journal of Cultural Heritage, 2011. 00000. URL: http://www.sciencedirect.com/science/article/pii/S1296207411000860, doi:10.1016/j.culher.2011.08.004.

2010

• Stef Busking, Charl P. Botha, and Frits H. Post. Dynamic Multi-View Exploration of Shape Spaces. Computer Graphics Forum, 29(3):973–982, 2010. 00008. doi:10.1111/j.1467-8659.2009.01684.x.
• Stef Busking, Charl P. Botha, and Frits H. Post. Example-based interactive illustration of multi-field datasets. Computers & Graphics, 34(6):719–728, December 2010. 00000. URL: http://www.sciencedirect.com/science/article/pii/S009784931000110X, doi:10.1016/j.cag.2010.07.004.
• Peter Kok, Martin Baiker, Emile A. Hendriks, Frits H. Post, Jouke Dijkstra, Clemens W.G.M. Löwik, Boudewijn P.F. Lelieveldt, and Charl P. Botha. Articulated Planar Reformation for Change Visualization in Small Animal Imaging. IEEE Transactions on Visualization and Computer Graphics, 16(6):1396–1404, 2010. 00016. doi:10.1109/TVCG.2010.134.
• Peter R Krekel, Edward R Valstar, Frits H Post, Piet M Rozing, and Charl P Botha. Combined Surface and Volume Processing for Fused Joint Segmentation. The International Journal for Computer Assisted Radiology and Surgery, 5(3):263–273, 2010. 00000. doi:10.1007/s11548-009-0400-4.
• Peter R. Krekel, Edward R. Valstar, Jurriaan de Groot, Frits H. Post, Rob. G.H.H. Nelissen, and Charl P. Botha. Visual Analysis of Multi-Joint Kinematic Data. Computer Graphics Forum, 29(3):1123–1132, 2010. 00003. doi:10.1111/j.1467-8659.2009.01681.x.
• Ruben A. Lee, Andre Van Zundert, Charl P. Botha, Arno L. Lataster, Tom C. Van Zundert, Willem G. Van Der Ham, and Pieter A. Wieringa. The Anatomy of the Thoracic Spinal Canal in Different Postures: An MRI Investigation. Regional Anesthesia and Pain Medicine, 35(4):364–369, 2010. 00000. doi:0.1097/AAP.0b013e3181e8a344.

2009

• Jorik Blaas, Charl P. Botha, Edward Grundy, Mark W. Jones, Robert S. Laramee, and Frits H. Post. Smooth graphs for visual exploration of higher order state transitions. IEEE Transactions on Visualization and Computer Graphics, 2009. 00017.
• Stef Busking, Charl P. Botha, and Frits H. Post. Direct Visualization of Deformation in Volumes. Computer Graphics Forum, 28(3):799–806, 2009. 00002.
• Peter R Krekel, Paul W de Bruin, Edward R Valstar, Frits H Post, Piet M Rozing, and Charl P Botha. Evaluation of Bone Impingement Prediction in Pre-operative Planning for Shoulder Arthroplasty. Journal of Engineering in Medicine, 223(7):813–822, 2009. 00005. doi:10.1243/09544119JEIM531.
• Peter Reischig, Jorik Blaas, Charl Botha, Alberto Bravin, Liisa Porra, Christian Nemoz, Arie Wallert, and Joris Dik. A note on medieval microfabrication: the visualization of a prayer nut by synchrotron-based computer X-ray tomography. Journal of Synchrotron Radiation, 16:310–313, 2009. 00005. doi:10.1107/S0909049508043082.
• Kenji Sihan, Charl Botha, Frits Post, Sebastiaan de Winter, Nieves Gonzalo, Evelyn Regar, Patrick J W C Serruys, Ronald Hamers, and Nico Bruining. Fully automatic three-dimensional quantitative analysis of intracoronary optical coherence tomography: method and Validation. Catheter Cardiovasc Interv, 74:1058–1065, May 2009. 00000. URL: http://dx.doi.org/10.1002/ccd.22125, doi:10.1002/ccd.22125.

2008

• J. Blaas, C. P. Botha, and F. H. Post. Extensions of Parallel Coordinates for Interactive Exploration of Large Multi-Timepoint Data Sets. IEEE Transactions on Visualization and Computer Graphics, 14(6):1436–1451, December 2008. 00031. doi:10.1109/TVCG.2008.131.

2007

• Sílvia D. Olabarriaga, Jeroen G. Snel, Charl P. Botha, and Robert G. Belleman. Integrated Support for Medical Image Analysis Methods: from Development to Clinical Application. IEEE Transactions on Information Technology in Biomedicine, 11(1):47–57, January 2007. 00022. doi:10.1109/TITB.2006.874929.

2006

• A.B. de Haan, B. Willekens, J. Klooster, A.A. Los, J. van Zwieten, C.P. Botha, H. Spekreijse, S.G. IJskes, and H.J. Simonsz. The prenatal development of the human orbit. Strabismus, 14(1):51–56, March 2006. 00006.
• P. Kok, B.P.F. Lelieveldt, C.P. Botha, F. Post, E. Kaijzel, I. Que, C.W.G.M. Lowik, J.H.C.Reiber, and J. Dijkstra. INTEGRIM: an image fusion tool for visualization and interpretation of micro-CT and multi-view BLI imaging. Molecular Imaging (SMI 2006 special issue), 2006. 00000 Abstract; oral presentation.
• L. Zhao, C.P. Botha, J.O. Bescos, R. Truyen, F.M. Vos, and F.H. Post. Lines of Curvature for Polyp Detection in Virtual Colonoscopy. IEEE Transactions on Visualization and Computer Graphics, 12(5):885 –892, October 2006. 00026. doi:10.1109/TVCG.2006.158.

2005

• Charl P. Botha and Frits H. Post. Improved Perspective Visibility Ordering for Object-Order Volume Rendering. The Visual Computer, 21(11):887–896, October 2005. 00000.

2002

• Edward R. Valstar, Charl P. Botha, Marjolein van der Glas, Piet M. Rozing, Frans C.T. van der Helm, Frits H. Post, and Albert M. Vossepoel. Towards computer-assisted surgery in shoulder joint replacement. ISPRS Journal of Photogrammetry and Remote Sensing, 56(5–6):326–337, August 2002. 00009.

Conference proceedings and everything else

2015

• Baldur van Lew, Charl P. Botha, Julien R. Milles, Henri A. Vrooman, Martijn van de Giessen, and Boudewijn P. F. Lelieveldt. Interactive analysis of geographically distributed population imaging data collections over light-path data networks. In SPIE Medical Imaging, volume 9418, 941806–941806–9. 2015. URL: http://dx.doi.org/10.1117/12.2081985, doi:10.1117/12.2081985.

2014

• Hanspeter Pfister, Verena Kaynig, Charl P. Botha, Stefan Bruckner, Vincent J. Dercksen, Hans-Christian Hege, and Jos BTM Roerdink. Visualization in connectomics. In Scientific Visualization, pages 221–245. Springer London, 2014. URL: http://link.springer.com/chapter/10.1007/978-1-4471-6497-5_21.
• C. P. Botha, B. Preim, A. E. Kaufman, S. Takahashi, and A. Ynnerman. From individual to population: challenges in medical visualization. In Scientific Visualization, pages 265–282. Springer London, 2014. URL: http://link.springer.com/chapter/10.1007/978-1-4471-6497-5_23.
• Noeska N. Smit, Berend Klein Haneveld, Marius Staring, Elmar Eisemann, Charl P. Botha, and Anna Vilanova. RegistrationShop: An Interactive 3d Medical Volume Registration System. In VCBM, 145–153. 2014. URL: https://www.researchgate.net/profile/Noeska_Smit/publication/266151138_RegistrationShop_An_Interactive_3D_Medical_Volume_Registration_System/links/54291b1b0cf238c6ea7cfb46.pdf.

2013

• Bernhard Preim and Charl Botha. Visual Computing for Medicine. Morgan Kaufmann, 2 edition, 2013. ISBN 978-0-12-415873-3. 00000. URL: http://medvisbook.com/.

2012

• A. Khmelinskii, E. Plenge, P. Kok, O. Dzyubachyk, D. H. J. Poot, E. Suidgeest, C. P. Botha, W. J. Niessen, L. van der Weerd, and E. Meijering. Super-resolution reconstruction of whole-body MRI mouse data: An interactive approach. In Biomedical Imaging (ISBI), 2012 9th IEEE International Symposium on, 1723–1726. 2012. 00001. URL: http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6235912.
• N. N. Smit, A. C. Kraima, MC DERUITER, D. JANSMA, and CP BOTHA. The unified anatomical human (beta): Model-based representation of heterogeneous anatomical data. In Workshop 3D Physiological Human (3DPH), CASA. 2012. 00002. URL: http://graphics.tudelft.nl/publications/smit_UAH_2012.pdf.
• André F. van Dixhoorn, Julien Milles, Baldur van Lew, and Charl P. Botha. BrainCove: A Tool for Voxel-Wise fMRI Brain Connectivity Visualization. In Proc. Eurographics Workshop on Visual Computing for Biology and Medicine, 99–106. 2012. 00000.
• Chris C. van Egmond, Charl P. Botha, and Burkhard C. Wünsche. Design and evaluation of multifield visualisation techniques for 2d vector fields. In Proceedings of the 27th Conference on Image and Vision Computing New Zealand, IVCNZ ‘12, 115–120. New York, NY, USA, 2012. ACM. 00000. URL: http://doi.acm.org/10.1145/2425836.2425862, doi:10.1145/2425836.2425862.

2011

• B.P.F. Lelieveldt, C.P. Botha, E.L. Kaijzel, E.A. Hendriks, J.H.C. Reiber, C.W.G.M. Lowik, and J. Dijkstra. Towards integrated analysis of longitudinal whole-body small animal imaging studies. In IEEE ICASSP, 5768–5771. IEEE, May 2011. 00002. URL: http://ieeexplore.ieee.org/Xplore/login.jsp?url=http%3A%2F%2Fieeexplore.ieee.org%2Fiel5%2F5916934%2F5946226%2F05947671.pdf%3Farnumber%3D5947671&authDecision=-203, doi:10.1109/ICASSP.2011.5947671.

2010

• Dirk Bartz, Charl P. Botha, Joachim Hornegger, Raghu Machiraju, and Bernhard Preim, editors. Proceedings of the second Eurographics workshop on Visual Computing for Biology and Medicine. Eurographics, Leipzig, 2010. ISBN 978-3-905674-28-6. 00000.
• Charl P. Botha, Peter R. Krekel, Edward R. Valstar, Paul W. De Bruin, Piet M. Rozing, and Frits H. Post. Pre-operative planning and intra-operative guidance for shoulder replacement surgery. In Hans Hagen, editor, Scientific Visualization: Advanced Concepts (Volume 1 of Dagstuhl Followups), 179–195. Schloss Dagstuhl–Leibniz-Zentrum fuer Informatik, 2010. 00000. URL: http://drops.dagstuhl.de/opus/volltexte/2010/2704/.
• Daniel F. Malan, Charl P. Botha, Rob G.H.H. Nelissen, and Edward R. Valstar. Voxel classification of perprosthetic tissues in clinical computer tomography of loosened hip prostheses. In Proc. ISBI, 1341–1344. 2010. 00000.
• Pieter J. Schaafsma, Sander Schutte, Huib J. Simonsz, Frits H. Post, and Charl P. Botha. Dynamic Visualisation of Orbital Fat Deformation using Anatomy-Guided Interaction. In Dirk Bartz, Charl P. Botha, Joachim Hornegger, Raghu Machiraju, Alexander Wiebel, and Bernhard Preim, editors, Eurographics Workshop on Visual Computing for Biology and Medicine, 1–8. Eurographics Association, 2010. 00000. doi:10.2312/VCBM/VCBM10/001-008.
• S. Schutte, G. Asmussen, F. van Keulen, C.P. Botha, F-W. Goudsmit, F.C.T. van Der Helm, and H.J. Simonsz. Orbital Soft Tissue Biomechanics. Elevier, 2010. 00000. URL: http://www.elsevier.com/wps/find/bookdescription.cws_home/720735/description.
• K. Sihan, C. Botha, F. Post, S. de Winter, E. Regar, P. J.W.C Serruys, R. Hamers, and N. Bruining. Fully automated gating of optical coherence tomography data. In Computing in Cardiology, 2010, 9–12. IEEE, September 2010. 00000.
• Martijn D. Steenwijk, Julien Milles, Mark A. Buchem, Johan H.C. Reiber, and Charl P. Botha. Integrated Visual Analysis for Heterogeneous Datasets in Cohort Studies. In IEEE VisWeek Workshop on Visual Analytics in Health Care. 2010. 00003. URL: http://research.ihost.com/vahc2010/.
• André Van Dixhoorn, Bastijn Vissers, Luca Ferrarini, Julien Milles, and Charl P. Botha. Visual analysis of integrated resting state functional brain connectivity and anatomy. In Dirk Bartz, Charl P. Botha, Joachim Hornegger, Raghu Machiraju, Alexander Wiebel, and Bernhard Preim, editors, Eurographics Workshop on Visual Computing for Biology and Medicine, 57–64. Eurographics Association, 2010. 00000.

2009

• K. de Vries, A.M. van Ditten, A.G. Dunning, S. Ladde, S. Schutte, C.P. Botha, P. Wielopolski, and H.J. Simonsz. Validation of the Delft Finite Element Model of Orbital Mechanics. In Proc. ARVO. 2009. 00000.
• A.G. Dunning, A.M. van Ditten, K. de Vries, S. Ladde, S. Schutte, C.P. Botha, P. Wielopolski, and H.J. Simonsz. High-Resolution MRI of Horizontal Gaze Position for Improved Optical Flow Analysis. In Proc. ARVO. 2009. 00000.
• Peter R. Krekel, Charl P. Botha, Edward R. Valstar, R.G.H.H. Nelissen, and Piet M. Rozing. RANGE OF MOTION SIMULATION FOR DIAGNOSIS OF FEMOROACETABULAR IMPINGEMENT. In Proc. International Society of Biomechanics (ISB). 2009. 00000.
• V.F. van Ravesteijn, L. Zhao, C.P. Botha, F.H. Post, F.M. Vos, and L.J. van Vliet. Combining mesh volume and streamline representations for polyp detection in CT colonography. In Proc. ISBI, 907–910. 2009. 00005.
• S. Schutte, F. Van Keulen, C.P. Botha, F.C.T. van Der Helm, and H.J. Simonsz. Friction in the Orbit. In Proc. ARVO. 2009. 00000.

2008

• Charl P. Botha, Thijs de Graaf, Sander Schutte, Ronald Root, Piotr Wielopolski, Frans C.T. van der Helm, Huibert J. Simonsz, and Frits H. Post. MRI-based visualisation of orbital fat deformation during eye motion. In Visualization in Medicine and Life Sciences (VMLS), 221–233. 2008. 00002. doi:10.1007/978-3-540-72630-2_13.
• Charl P. Botha, Gordon Kindlmann, Wiro J. Niessen, and Bernhard Preim, editors. Proceedings of the first Eurographics workshop on Visual Computing for Biomedicine. Eurographics Association, October 2008. 00000 ISBN 978-3-905674-13-2.
• Charl P. Botha and Frits H. Post. Hybrid Scheduling in the DeVIDE Dataflow Visualisation Environment. In Helwig Hauser, Steffen Strassburger, and Holger Theisel, editors, Proceedings of Simulation and Visualization, 309–322. SCS Publishing House Erlangen, February 2008. 00025 Best paper award. URL: http://graphics.tudelft.nl/publications/botha2008.pdf.
• Fernando V. Paulovich, Roberto Pinho, Charl P. Botha, Anton Heijs, and Rosane Minghim. PEx-WEB: Content-based visualization of web search results. In Proc. 12 International Conference Information Visualisation (IV08), 208–214. IEEE Computer Society, 2008. 00013. doi:10.1109/IV.2008.94.
• K. Sihan, C. Botha, F. Post, S de Winter, E. Regar, R. Hamers, and N. Bruining. A Novel Approach to Quantitative Analysis of Intravascular Optical Coherence Tomography Imaging. In Proceedings of Computers in Cardiology, 1089–1092. 2008. 00007 http://www.cinc.org/Program/PC7-4.htm.
• Lingxiao Zhao, Charl P. Botha, Roel Truyen, Frans M. Vos, and Frits H. Post. Efficient Seeding and Defragmentation of Curvature Streamlines for Colonic Polyp Detection. In X.P. Hu and A.V. Clough, editors, Proceedings of SPIE Medical Imaging 2008, volume 6916. 2008. 00001.
• Lingxiao Zhao, Vincent F. van Ravesteijn, Charl P. Botha, Roel Truyen, Frans M. Vos, and Frits H. Post. Surface Curvature Line Clustering for Polyp Detection in CT Colonography. In Charl P. Botha, Gordon Kindlmann, Wiro J. Niessen, and Bernhard Preim, editors, Proceedings of the first Eurographics workshop on Visual Computing for Biomedicine (VCBM), 53–60. 2008. 00001.

2007

• Jorik Blaas, Charl P. Botha, Charles Majoie, Aart Nederveen, Frans M. Vos, and Frits H. Post. Interactive Visualization of Fused fMRI and DTI for Planning Brain Tumor Resections. In Kevin R. Cleary and Michael I. Miga, editors, Proc. SPIE Medical Imaging 2007, volume 6509. 2007. 00006.
• Jorik Blaas, Charl P. Botha, and Frits H. Post. Interactive visualization of multi-field medical data using linked physical and feature-space views. In Ken Museth, Anders Ynnerman, and Torsten Möller, editors, Proc. Eurographics / IEEE-VGTC EuroVis, 123–130. 2007. 00021.
• Nico Bruining, Steffen Groot, Charl P. Botha, Frits H. Post, and Ronald Hamers. An Intravascular Ultrasound Simulator of Coronary Plaques Based on Histopathology. In American College of Cardiology Annual Scientific Session (ACC.07). 2007. 00000.
• P. Kok, J. Dijkstra, C. P. Botha, F. H. Post, E. Kaijzel, I. Que, C. Lowik, J. Reiber, and B. P. F. Lelieveldt. Integrated visualization of multi-angle bioluminescence imaging and micro CT. In Kevin R. Cleary and Michael I. Miga, editors, Proc. SPIE Medical Imaging 2007, volume 6509. 2007. 00017.
• Peter R. Krekel, Charl P. Botha, Paul W. de Bruin, Edward R. Valstar, P.M. Rozing, and Frits H. Post. Computer-assisted shoulder replacement. In David S. Ebert, Hans Hagen, Kenneth I. Joy, and Daniel A. Keith, editors, 07291 Abstracts Collection – Scientific Visualization (Dagstuhl Seminar Proceedings), 2. Internationales Begegnungs- und Forschungszentrum für Informatik (IBFI), Schloss Dagstuhl, Germany, 2007. 00000 Abstract. Oral presentation by C.P. Botha. URL: http://drops.dagstuhl.de/opus/frontdoor.php?source_opus=1414.
• Peter R. Krekel, Charl P. Botha, Frits H. Post, Edward R. Valstar, Paul de Bruin, and P.M. Rozing. Range of motion simulation for shoulder arthroplasty. In Frank Langlotz, Brian L. Davies, and Paul A. Grützner, editors, 7th Annual Meeting of the International Society for Computer Assisted Orthopaedic Surgery, 735–738. Heidelberg, Germany, June 2007. 00000 Poster, 4 page abstract in proceedings.
• Peter R. Krekel, Paul W. de Bruin, Charl P. Botha, Edward R. Valstar, P. M. Rozing, and Frits H. Post. Evaluation of Shoulder Range of Motion Prediction: Materials and Methods. In ASCI 2007 - Proceedings of the 13th Annual Conference of the Advanced School for Computing and Imaging. 2007. 00000.
• Ketan C. Maheshwari, Silvia D. Olabarriaga, Charl P. Botha, Jeroen G. Snel, Johan Alkemade, and Adam Belloum. Problem Solving Environment for Medical Image Analysis. In CBMS ‘07: Proceedings of the IEEE International Symposium on Computer Based Medical Systems, 165–170. 2007. 00005. doi:10.1109/CBMS.2007.87.
• Lingxiao Zhao, Charl Botha, Javier Bescos, Roel Truyen, Frans Vos, and Frits Post. Curvature Lines for Colonic Polyp Characterization. In ASCI 2007 - Proceedings of the 13th Annual Conference of the Advanced School for Computing and Imaging. 2007. 00000 Accepted, to appear.

2006

• Jorik Blaas, Charl P. Botha, Bart Peters, Frans M. Vos, and Frits H. Post. Interactive Exploration of Connective Brain Structure through Diffusion Tensor Imaging. In ASCI 2006 - Proceedings of the 11th annual conference of the Advanced School for Computing and Imaging. June 2006. 00000.
• Paul W. de Bruin, Charl P. Botha, Berend C. Stoel, Edward R. Valstar, and Piet M. Rozing. Validation of navigated glenoid component Placement: an in-vitro pilot study. In 19th Annual Symposium International Society for Technology in Arthroplasty (ISTA). 2006. 00000 Abstract; oral presentation.
• S.C. Groot, R. Hamers, F.H. Post, C.P. Botha, and N. Bruining. IVUS Simulation Based on Histopathology. In Alan Murray, editor, Computers in Cardiology, 681–684. 2006. 00005 ISSN 0276-6547. URL: http://cinc.mit.edu/archives/2006/.
• Peter R. Krekel, Charl P. Botha, Frits H. Post, Edward R. Valstar, and Piet M. Rozing. Pre-Operative Impingement Detection For Shoulder Arthroplasty. In Proceedings of the International Shoulder Group. 2006. 00000 Four page article, oral presentation.
• Peter R. Krekel, Charl P. Botha, Edward R. Valstar, Paul W. de Bruin, Piet M. Rozing, and Frits H. Post. Interactive simulation and comparative visualisation of the bone-determined range of motion of the human shoulder. In Thomas Schulze, Graham Horton, Bernhard Preim, and Stefan Schlechtweg, editors, Proceedings of Simulation and Visualization, 275–288. SCS Publishing House Erlangen, March 2006. 00014 Best Paper Award.
• Peter R. Krekel, Charl P. Botha, Edward R. Valstar, Paul W. de Bruin, Piet M. Rozing, and Frits H. Post. Visualisation of gleno-humeral range of motion for shoulder arthroplasty. In ASCI 2006 - Proceedings of the 11th annual conference of the Advanced School for Computing and Imaging. June 2006. 00000.
• Joris E. van Zwieten, Charl P. Botha, Ben Willekens, Sander Schutte, Frits H. Post, and Huib J. Simonsz. Digitisation and 3d reconstruction of 30 year old microscopic sections of human embryo, foetus and orbit. In A. Campilho and M. Kamel, editors, Image Analysis and Recognition, Proc. 3rd Intl. Conf. on Image Analysis and Recognition (ICIAR 2006), volume LNCS 4142 of Lecture Notes on Computer Science, 636–647. Springer, 2006. 00003.

2005

• Jorik Blaas, Charl P. Botha, Bart Peters, Frans M. Vos, and Frits H. Post. Fast and reproducible fiber bundle selection in DTI visualization. In Claudio Silva, Eduard Gröller, and Holly Rushmeier, editors, Proceedings of IEEE Visualization 2005, 59–64. October 2005. 00039.
• Charl P. Botha, Thijs de Graaf, Ronald Root, Piotr Wielopolski, Sander Schutte, Frits H. Post, Frans C.T. van der Helm, and Huib Simonsz. Time-varying three-dimensional vector field visualisation for the analysis of retrobulbar fat mobility during eye motion. In B.J.A. Kröse, H.J. Bos, E.A. Hendriks, and J.W.J. Heijnsdijk, editors, ASCI 2005 - Proceedings of the 11th annual conference of the Advanced School for Computing and Imaging, 271–275. June 2005. 00003.
• R. Root, T. R. de Graaf, C. P. Botha, P. Wielopolski, S. Schutte, F. C. T. van der Helm, and H. J. Simonsz. Deformation of retrobulbar fat analysis with optical flow technique. In Proceedings of the Association for Research in Vision and Ophthalmology (ARVO) Annual Meeting. 2005. 00000.
• J. van Zwieten, C. P. Botha, B. Willekens, S. Schutte, F. H. Post, and H. J. Simonsz. Digital 3d Reconstruction of Human Orbitae from High Resolution Serial Sections. In Proceedings of the Association for Research in Vision and Ophthalmology (ARVO) Annual Meeting. 2005. 00001.

2004

• Benjamin Vrolijk, Charl P. Botha, and Frits H. Post. Fast extraction and rendering of isosurfaces from 4d data. In J. J. van Wijk, J. W. J. Heijnsdijk, K. G. Langendoen, and R. Veltkamp, editors, ASCI 2004 - Proceedings of the 10th annual conference of the Advanced School for Computing and Imaging, 281–290. June 2004. 00002.
• Benjamin Vrolijk, Charl P. Botha, and Frits H. Post. Fast Time-Dependent Isosurface Extraction and Rendering. In Alexander Pasko, editor, Proceedings of the Spring Conference on Computer Graphics 2004, 39–48. Comenius University, Bratislava, April 2004. 00007.

2003

• Charl P. Botha and Frits H. Post. ShellSplatting: Interactive Rendering of Anisotropic Volumes. In G.-P. Bonneau, S. Hahmann, and C. D. Hansen, editors, Data Visualization 2003 (Proceedings of Joint Eurographics - IEEE TCVG Symposium on Visualization), 105–112. 2003. 00014.

2002

• Charl P. Botha and Frits H. Post. Interactive Previewing for Transfer Function Specification in Volume Rendering. In D. Ebert, P. Brunet, and I. Navazo, editors, Data Visualization 2002 (Proceedings of Joint Eurographics - IEEE TCVG Symposium on Visualization). ACM SigGraph, 2002. 00005.
• Charl P. Botha and Frits H. Post. New technique for transfer function specification in direct volume rendering using real-time visual feedback. In Seong K. Mun, editor, Proceedings of the SPIE International Symposium on Medical Imaging, volume 4681 - Visualization, Image-Guided Procedures, and Display. 2002. 00016.
• Marjolein van der Glas, Frans M. Vos, Charl P. Botha, and Albert M. Vossepoel. Determination of Position and Radius of Ball Joints. In Milan Sonka, editor, Proceedings of the SPIE International Symposium on Medical Imaging, volume 4684 - Image Processing, 1571–1577. 2002. 00000.

2001

• Charl P. Botha and Frits H. Post. A Visualisation Platform for Shoulder Replacement Surgery. In Silvia D. Olabarriaga, Wiro J. Niessen, and Frans Gerritsen, editors, Interactive Medical Image Visualization and Analysis (IMIVA) - Satellite Workshop of MICCAI 2001, 61–64. October 2001. 00006.

1999

• C.P. Botha, D.M. Weber, M. van Olst, and D.W. Moolman. A practical system for realtime on-plant flotation froth visual parameter extraction. In Proceedings of IEEE Africon, 103–106. 1999. 00000.

1998

• Charl Coetzee, Charl Botha, and David Weber. PC Based Number Plate Recognition System. In Proceedings of IEEE International Symposium on Industrial Electronics, 605–610. 1998. 00068.